Estimating tumour microenvironment cellular states from bulk RNAseq produces biomarkers of clinical outcome across stages

Marcelo Hurtado1 *‡ , Elisa Gobbini9,10, Laurent Greillier20, Leila Khajavi 1‡, Abdelmounim Essabbar 1 , Michael Kammer 1,2, Anne Pradines1,3, Anne Casanova1,3, Anna Kruczynski4 , Sandrine Gouin5 , Estelle Tarenchon-Clermont 1,5, Maria Fernanda Senosain6,7, Yong Zou6,7, Stephen Deppen6,7, Eric Grogan6,7, Shillin Zhao8 , Lionel Falchero11, Jean Bernard Auliac12, Marie Bernardi13, Sophie Bayle14, Marie Marcq15, Julian Pinsolle16, Stéphane Hominal17, Olivier Bylicki18, Sabine Vieillot19, Fabrice Barlesi21, Frédérique Penault-Llorca22, Gilles Favre1 , Fabien Maldonado6 , Francisco Cruzalegui4 , Olivier Delfour 4 , Jenny Valladeau-Guilemond9, Julien Mazières1,5 and Vera Pancaldi1*

 

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